Add Batch 3 and Batch 4 changes for R1 manuscript

Code/models/width_optimization/2W/ml_models/per_output_models_B34_H30/it1/local_oof_errors_2W_B34_H30_it1.csv

@@ -44,3 +44,21 @@ tfmmax_frame,5,18.64,13.8,111.9409,114.5976509595643,2.656750959564306,0.0
 tfmmax_frame,6,13.46,20.99,85.7607,93.48245442502184,7.721754425021842,0.0
 tfmmax_frame,7,8.58,8.88,83.381,91.12531013954366,7.744310139543657,0.0
 tfmmax_frame,8,15.17,17.61,94.4971,95.74313202279355,1.2460320227935426,0.0
+min_window_tfd,0,15.22,18.46,79.5103,68.79487133175842,10.715428668241586,10.715428668241586
+distortion_measure,0,15.22,18.46,2.2174451037299636e-06,2.525326484919471e-06,3.0788138118950727e-07,0.0
+min_window_tfd,1,12.74,12.61,93.0272,97.73845131819569,4.711251318195693,0.0
+distortion_measure,1,12.74,12.61,2.981550687625611e-06,3.6077026353863344e-06,6.261519477607236e-07,0.0
+min_window_tfd,2,18.03,11.3,34.7023,37.2014881865335,2.4991881865335017,0.0
+distortion_measure,2,18.03,11.3,3.9300911637151415e-06,3.533669953341776e-06,3.9642121037336555e-07,3.9642121037336555e-07
+min_window_tfd,3,21.19,19.38,49.5951,71.22662844990502,21.63152844990502,0.0
+distortion_measure,3,21.19,19.38,2.2790486312360745e-06,2.3069405841352184e-06,2.7891952899143904e-08,0.0
+min_window_tfd,4,9.78,15.96,79.6009,95.8017268447797,16.200826844779698,0.0
+distortion_measure,4,9.78,15.96,2.9513319664591657e-06,2.474073625458256e-06,4.772583410009098e-07,4.772583410009098e-07
+min_window_tfd,5,18.64,13.8,37.1978,35.300995927654284,1.8968040723457165,1.8968040723457165
+distortion_measure,5,18.64,13.8,3.190293870445974e-06,3.200119248881606e-06,9.825378435631842e-09,0.0
+min_window_tfd,6,13.46,20.99,59.7863,82.66812785858757,22.88182785858757,0.0
+distortion_measure,6,13.46,20.99,2.20994174682602e-06,2.5426629710617117e-06,3.327212242356917e-07,0.0
+min_window_tfd,7,8.58,8.88,144.4093,109.54438649997257,34.86491350002743,34.86491350002743
+distortion_measure,7,8.58,8.88,3.7422193481538176e-06,2.7666416698819123e-06,9.755776782719054e-07,9.755776782719054e-07
+min_window_tfd,8,15.17,17.61,85.6117,82.19519087448936,3.4165091255106432,3.4165091255106432
+distortion_measure,8,15.17,17.61,2.319332804682279e-06,2.2188032040150535e-06,1.0052960066722558e-07,1.0052960066722558e-07

Code/reports/width_optimization/2W/ml_optimization/it1/optimization_results_2W_B34_H30_TFD_W100.csv

@@ -4,11 +4,22 @@ Configuration_B,34.0
 Configuration_H,30.0
 Configuration_TFD_W,100.0
 Iteration,1.0
-tw1_optimal,15.756209076636766
-tw2_optimal,19.999999467023997
-Objective_score,3.682647845498934
-Exy_tw1,0.049785817649385625
-Exy_tw2,0.04521727380072006
-TFM_tw1,100.70532607837181
-TFM_tw2,59.680000841580224
-TFM_frame,93.6826477616043
+tw1_optimal,14.389564101162314
+tw2_optimal,16.689202205393375
+candidate_tw1_raw,14.389564101162314
+candidate_tw1,14.39
+rounding_delta_tw1,0.00043589883768646587
+candidate_tw2_raw,16.689202205393375
+candidate_tw2,16.69
+rounding_delta_tw2,0.000797794606626212
+Objective_score,3.664084434454253
+Exy_tw1,0.05236470345214329
+Exy_tw2,0.05924118181423681
+TFM_tw1,100.68676266732713
+TFM_tw2,92.25103337960783
+TFM_frame,93.66408432820377
+manuf_Exy_tw1,0.052364206945286006
+manuf_Exy_tw2,0.05923753693226129
+manuf_TFM_tw1,100.68592131258363
+manuf_TFM_tw2,92.24298645448413
+manuf_TFM_frame,93.66445935040625

Code/reports/width_optimization/2W/ml_optimization/ml_2W_B34_H30_TFD_W100_it1_feasibility_de_summary.csv

+n_runs,min_objective,median_objective,mean_objective,std_objective,iqr_objective,median_nit,median_nfev,tw1_median,tw1_mean,tw1_std,tw1_iqr,tw2_median,tw2_mean,tw2_std,tw2_iqr,n_basins,reproducibility_rate,geometry_n_basins,geometry_reproducibility_rate,dominant_basin_count,geometry_dominant_basin_count,dominant_basin_indices,geometry_dominant_basin_indices,best_basin_run_idx,best_basin_objective,best_basin_x,tw1_dominant_basin_std,tw1_dominant_basin_iqr,tw1_dominant_basin_range,tw2_dominant_basin_std,tw2_dominant_basin_iqr,tw2_dominant_basin_range,performance_reproducibility_rate,performance_equivalent_count,performance_equivalent_indices,performance_best_objective,performance_best_run_idx,performance_relative_tolerance,performance_max_relative_error_equivalent_group,performance_objective_spread,performance_objective_iqr,n_total_runs,n_valid_runs,n_successful_runs,representative_run_idx,geometry_basin_rep_run_idx
+30,3.664084434454253,3.6826480353498283,3.6795542324384294,0.007036442592627075,3.965913606407412e-07,63.0,3200.0,15.75620630861528,15.528432032447759,0.5180238811309796,8.011772978377962e-06,19.9999925106928,19.44819262770685,1.2549506563879291,1.992621255197946e-05,2,0.8333333333333334,2,0.8333333333333334,25,25,12;8;28;14;7;26;5;18;22;4;23;13;25;10;27;3;16;0;2;1;29;15;6;21;19,12;8;28;14;7;26;5;18;22;4;23;13;25;10;27;3;16;0;2;1;29;15;6;21;19,12,3.682647845498934,"[15.756209076636766, 19.999999467023997]",3.5130721387288365e-06,2.814688865981907e-06,1.1960812896560924e-05,8.74595445351237e-06,7.066766436025773e-06,2.9809761791455003e-05,0.16666666666666666,5,9;11;17;20;24,3.664084434454253,11,0.001,1.9422532869228138e-07,0.01856414989806865,3.965913606407412e-07,30,30,30,11,12

Code/reports/width_optimization/2W/ml_optimization/ml_2W_B34_H30_TFD_W100_it1_minimum_violation_solution.csv

+w_val,b_val,h_val,tfd_w_val,it,feasible,minimum_identified_violation,tw1,tw2,TFD_tw1,TFD_tw2,TFD_tw1_margin,TFD_tw2_margin,TFD_tw1_conservative,TFD_tw2_conservative,TFD_frame,TFD_frame_margin,TFD_frame_conservative,safety_margin_mode,safety_margin_factor,max_violation,viol_window_1,viol_window_2,viol_frame
+2,34,30,100,1,False,3.664084434454253,14.389564101162314,16.689202205393375,100.68676266732713,92.25103337960783,2.9773217671271226,10.715428668241586,103.66408443445425,102.96646204784942,93.66408432820377,0.0,93.66408432820377,local_oof,1.0,3.664084434454253,3.664084434454253,2.9664620478494186,3.6640843282037707

Code/reports/width_optimization/3W/ml_optimization/it4/optimization_results_3W_B29_H45_TFD_W100.csv

@@ -7,6 +7,15 @@ Iteration,4.0
 tw1_optimal,5.107783743688125
 tw2_optimal,7.449034156017617
 tw3_optimal,8.371536009042268
+candidate_tw1_raw,5.107783743688125
+candidate_tw1,5.11
+rounding_delta_tw1,0.0022162563118754974
+candidate_tw2_raw,7.449034156017617
+candidate_tw2,7.45
+rounding_delta_tw2,0.0009658439823834186
+candidate_tw3_raw,8.371536009042268
+candidate_tw3,8.37
+rounding_delta_tw3,-0.0015360090422689154
 Objective_score,-1.306799128950891e-06
 Exy_tw1,0.0531167629314931
 Exy_tw2,0.05536691245735284
@@ -15,3 +24,10 @@ TFM_tw1,99.21442333488952
 TFM_tw2,94.93646818772172
 TFM_tw3,90.29039221944643
 TFM_frame,57.501208891048265
+manuf_Exy_tw1,0.05308684408937943
+manuf_Exy_tw2,0.05535816537536256
+manuf_Exy_tw3,0.056690156921532175
+manuf_TFM_tw1,99.14917150028359
+manuf_TFM_tw2,94.90523864610947
+manuf_TFM_tw3,90.32942764409073
+manuf_TFM_frame,57.51345572087089

Code/reports/width_optimization/3W/ml_optimization/ml_3W_B29_H45_TFD_W100_it4_lexicographic_optimization_summary.csv

-w_val,b_val,h_val,tfd_w_val,it,safety_margin_mode,safety_margin_factor,local_margin_support_pass,local_margin_k_requested,local_support_percentile,local_margin_fallback,TFD_tw1_margin_source,TFD_tw1_margin_in_support,TFD_tw1_margin_k,TFD_tw1_margin_nearest_distance,TFD_tw1_margin_support_radius,TFD_tw1_margin_neighbor_samples,TFD_tw1_margin_neighbor_distances,TFD_tw1_margin_neighbor_underprediction,TFD_tw2_margin_source,TFD_tw2_margin_in_support,TFD_tw2_margin_k,TFD_tw2_margin_nearest_distance,TFD_tw2_margin_support_radius,TFD_tw2_margin_neighbor_samples,TFD_tw2_margin_neighbor_distances,TFD_tw2_margin_neighbor_underprediction,TFD_tw3_margin_source,TFD_tw3_margin_in_support,TFD_tw3_margin_k,TFD_tw3_margin_nearest_distance,TFD_tw3_margin_support_radius,TFD_tw3_margin_neighbor_samples,TFD_tw3_margin_neighbor_distances,TFD_tw3_margin_neighbor_underprediction,TFD_frame_margin_source,TFD_frame_margin_in_support,TFD_frame_margin_k,TFD_frame_margin_nearest_distance,TFD_frame_margin_support_radius,TFD_frame_margin_neighbor_samples,TFD_frame_margin_neighbor_distances,TFD_frame_margin_neighbor_underprediction,min_de_reproducibility_required,stage1_performance_reproducibility_rate,stage2_performance_reproducibility_rate,stage1_performance_reproducibility_pass,stage2_performance_reproducibility_pass,de_performance_reproducibility_pass,stage1_geometry_reproducibility_rate,stage2_geometry_reproducibility_rate,stage1_geometry_n_basins,stage2_geometry_n_basins,geometry_unique_or_reproducible,stage1_performance_spread_min_window_tfd,stage2_best_distortion_measure,stage2_performance_spread_distortion,feasible_domain_found,minimum_domain_violation,feasible,tw1,tw2,tw3,TFD_tw1,TFD_tw2,TFD_tw3,TFD_tw1_margin,TFD_tw2_margin,TFD_tw3_margin,TFD_tw1_conservative,TFD_tw2_conservative,TFD_tw3_conservative,TFD_frame,TFD_frame_margin,TFD_frame_conservative,min_window_tfd,max_window_tfd,mean_window_tfd,window_tfd_range_diagnostic,distortion_measure,stage1_Tmin_star,stage1_preservation_threshold,max_constraint_violation,stage1_preservation_tolerance,stage1_preservation_tolerance_source,stage1_performance_group_count,stage1_rep_run,stage1_rep_seed,stage2_rep_run,stage2_rep_seed,stage2_tw1_dominant_basin_iqr,stage2_tw2_dominant_basin_iqr,stage2_tw3_dominant_basin_iqr,stage2_tw1_dominant_basin_range,stage2_tw2_dominant_basin_range,stage2_tw3_dominant_basin_range
-3,29,45,100,4,local_oof,1.0,True,-1,95.0,global,local_knn_max,True,5,0.19796330804369972,0.5722090560728312,17;2;19;16;18,0.19796331;0.21295065;0.31280287;0.38363723;0.4405638,0;0;0;0;0,local_knn_max,True,5,0.19796330804369972,0.5722090560728312,17;2;19;16;18,0.19796331;0.21295065;0.31280287;0.38363723;0.4405638,0;5.0635262;0.4480527;0;0,local_knn_max,True,5,0.19796330804369972,0.5722090560728312,17;2;19;16;18,0.19796331;0.21295065;0.31280287;0.38363723;0.4405638,0;9.7096075;0;0;3.0397123,local_knn_max,True,5,0.19796330804369972,0.5722090560728312,17;2;19;16;18,0.19796331;0.21295065;0.31280287;0.38363723;0.4405638,0;0.8826844;0.27213773;0;0.094025442,0.8,1.0,1.0,True,True,True,0.3,1.0,6,1,False,3.28507100277875e-06,1.306799128950891e-06,2.3937105624913084e-13,True,0.0,True,5.107783743688125,7.449034156017617,8.371536009042268,99.21442333488952,94.93646818772172,90.29039221944643,0.0,5.063526170536292,9.709607450118042,99.21442333488952,99.99999435825801,99.99999966956447,57.501208891048265,0.8826844009775954,58.38389329202586,90.29039221944643,99.21442333488952,94.81376124735255,8.924031115443086,1.306799128950891e-06,90.2903925476171,90.2893925476171,0.0,0.001,performance_group_spread,30,5,47,27,69,0.0014176657899946932,9.24724214712569e-05,0.0005873247940790804,0.005601095003969547,0.0003629683766019909,0.002319526779546166
+w_val,b_val,h_val,tfd_w_val,it,safety_margin_mode,safety_margin_factor,local_margin_support_pass,local_margin_k_requested,local_support_percentile,local_margin_fallback,TFD_tw1_margin_source,TFD_tw1_margin_in_support,TFD_tw1_margin_k,TFD_tw1_margin_nearest_distance,TFD_tw1_margin_support_radius,TFD_tw1_margin_neighbor_samples,TFD_tw1_margin_neighbor_distances,TFD_tw1_margin_neighbor_underprediction,TFD_tw2_margin_source,TFD_tw2_margin_in_support,TFD_tw2_margin_k,TFD_tw2_margin_nearest_distance,TFD_tw2_margin_support_radius,TFD_tw2_margin_neighbor_samples,TFD_tw2_margin_neighbor_distances,TFD_tw2_margin_neighbor_underprediction,TFD_tw3_margin_source,TFD_tw3_margin_in_support,TFD_tw3_margin_k,TFD_tw3_margin_nearest_distance,TFD_tw3_margin_support_radius,TFD_tw3_margin_neighbor_samples,TFD_tw3_margin_neighbor_distances,TFD_tw3_margin_neighbor_underprediction,TFD_frame_margin_source,TFD_frame_margin_in_support,TFD_frame_margin_k,TFD_frame_margin_nearest_distance,TFD_frame_margin_support_radius,TFD_frame_margin_neighbor_samples,TFD_frame_margin_neighbor_distances,TFD_frame_margin_neighbor_underprediction,min_de_reproducibility_required,stage1_performance_reproducibility_rate,stage2_performance_reproducibility_rate,stage1_performance_reproducibility_pass,stage2_performance_reproducibility_pass,de_performance_reproducibility_pass,stage1_geometry_reproducibility_rate,stage2_geometry_reproducibility_rate,stage1_geometry_n_basins,stage2_geometry_n_basins,geometry_unique_or_reproducible,stage1_performance_spread_min_window_tfd,stage2_best_distortion_measure,stage2_performance_spread_distortion,feasible_domain_found,minimum_domain_violation,feasible,tw1,tw2,tw3,geometry_projection_applied,manufacturing_thickness_resolution_mm,candidate_tw1_raw,candidate_tw2_raw,candidate_tw3_raw,candidate_tw1,candidate_tw2,candidate_tw3,rounding_delta_tw1,rounding_delta_tw2,rounding_delta_tw3,manuf_min_window_tfd,manuf_max_window_tfd,manuf_mean_window_tfd,manuf_distortion_measure,manuf_frame_tfd,manuf_frame_tfd_conservative,manuf_max_constraint_violation,manuf_feasible,manuf_local_margin_support_pass,manuf_TFD_tw1,manuf_TFD_tw2,manuf_TFD_tw3,manuf_TFD_tw1_conservative,manuf_TFD_tw2_conservative,manuf_TFD_tw3_conservative,TFD_tw1,TFD_tw2,TFD_tw3,TFD_tw1_margin,TFD_tw2_margin,TFD_tw3_margin,TFD_tw1_conservative,TFD_tw2_conservative,TFD_tw3_conservative,TFD_frame,TFD_frame_margin,TFD_frame_conservative,min_window_tfd,max_window_tfd,mean_window_tfd,window_tfd_range_diagnostic,distortion_measure,stage1_Tmin_star,stage1_preservation_threshold,max_constraint_violation,stage1_preservation_tolerance,stage1_preservation_tolerance_source,stage1_performance_group_count,stage1_rep_run,stage1_rep_seed,stage2_rep_run,stage2_rep_seed,stage2_tw1_dominant_basin_iqr,stage2_tw2_dominant_basin_iqr,stage2_tw3_dominant_basin_iqr,stage2_tw1_dominant_basin_range,stage2_tw2_dominant_basin_range,stage2_tw3_dominant_basin_range
+3,29,45,100,4,local_oof,1.0,True,-1,95.0,global,local_knn_max,True,5,0.19796330804369972,0.5722090560728312,17;2;19;16;18,0.19796331;0.21295065;0.31280287;0.38363723;0.4405638,0;0;0;0;0,local_knn_max,True,5,0.19796330804369972,0.5722090560728312,17;2;19;16;18,0.19796331;0.21295065;0.31280287;0.38363723;0.4405638,0;5.0635262;0.4480527;0;0,local_knn_max,True,5,0.19796330804369972,0.5722090560728312,17;2;19;16;18,0.19796331;0.21295065;0.31280287;0.38363723;0.4405638,0;9.7096075;0;0;3.0397123,local_knn_max,True,5,0.19796330804369972,0.5722090560728312,17;2;19;16;18,0.19796331;0.21295065;0.31280287;0.38363723;0.4405638,0;0.8826844;0.27213773;0;0.094025442,0.8,1.0,1.0,True,True,True,0.3,1.0,6,1,False,3.28507100277875e-06,1.306799128950891e-06,2.3937105624913084e-13,True,0.0,True,5.107783743688125,7.449034156017617,8.371536009042268,True,0.01,5.107783743688125,7.449034156017617,8.371536009042268,5.11,7.45,8.37,0.0022162563118754974,0.0009658439823834186,-0.0015360090422689154,90.32942764409073,99.14917150028359,94.79461259682792,1.3068664539339266e-06,57.51345572087089,58.39614012184848,0.039035094208770715,False,True,99.14917150028359,94.90523864610947,90.32942764409073,99.14917150028359,99.96876481664576,100.03903509420877,99.21442333488952,94.93646818772172,90.29039221944643,0.0,5.063526170536292,9.709607450118042,99.21442333488952,99.99999435825801,99.99999966956447,57.501208891048265,0.8826844009775954,58.38389329202586,90.29039221944643,99.21442333488952,94.81376124735255,8.924031115443086,1.306799128950891e-06,90.2903925476171,90.2893925476171,0.0,0.001,performance_group_spread,30,5,47,27,69,0.0014176657899946932,9.24724214712569e-05,0.0005873247940790804,0.005601095003969547,0.0003629683766019909,0.002319526779546166

ManuscriptR1/images/MethodologyFlowChart/MethodologyFlowChart.drawio

@@ -26,7 +26,7 @@
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+        <mxCell id="Px4PDGIz-QymyEU-CPKU-7" parent="Px4PDGIz-QymyEU-CPKU-5" style="text;html=1;whiteSpace=wrap;strokeColor=none;fillColor=none;align=left;verticalAlign=middle;rounded=0;fontColor=light-dark(#000000,#000000);fontSize=22;" value="&lt;div&gt;&lt;div&gt;&lt;font color=&quot;#000000&quot;&gt;&lt;b&gt;Predict:&lt;/b&gt;&lt;/font&gt;&lt;/div&gt;&lt;div&gt;&lt;ul&gt;&lt;li&gt;&lt;font color=&quot;#000000&quot;&gt;Damage indicators&lt;/font&gt;&lt;/li&gt;&lt;li&gt;&lt;font color=&quot;#000000&quot;&gt;Shear-distortion performance&lt;/font&gt;&lt;/li&gt;&lt;/ul&gt;&lt;/div&gt;&lt;/div&gt;" vertex="1">
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